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Perry Blackshear, Biochemistry

The major area of study in the laboratory concerns a novel class of CCCH tandem zinc finger proteins. This protein family consists of three orthologous proteins in mice and man. All three family members can bind to AU-rich elements in certain mRNA species, causing the removal of their poly(A) tails and speeding up their breakdown. The mechanism of this effect on mRNA stability is unknown, and is an active area of study. The prototype protein of this family, TTP, is involved in the physiological regulation of medically important cytokines, such as tumor necrosis factor alpha (TNF), and clinical studies have been initiated to study possible TTP defects in TNF excess diseases such as rheumatoid arthritis. As determined from gene knockout studies, the other family members are involved in early embryonic development; identification of their target mRNAs is an active priority. Finally, the molecular activities of this protein family are being studied in model organisms expressing only a single family member, such as Drosophila (and other insects) and fission yeast.

A second major topic under study involves a small family of direct substrates for protein kinase C (PKC), consisting of MARCKS and its smaller relative, MLP. Current projects include structure function studies of the protein in two major systems, development of the mouse central nervous system, and early embryogenesis in Xenopus laevis. Approaches used include knockout mice, and embryonic stem cells derived from them, to study the roles of these proteins in cell migration during brain development; other cell behaviors are being studied in cultured neurons derived from the stem cells. Finally, we are investigating the possibility that mutations in the MARCKS and MLP genes are involved in human neural tube defects, particularly at the level of increasing a genetic predisposition to environmental causes of these defects.

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